Statistical Genetics and Bioinformatics Reading Group
Autumn 2019
Time: Thursdays 4:10-5:05 PM
Place: Cockins 228
Information on reading materials will be updated as they become available.
For further information about this semester's reading group, please contact
Shili Lin.
- Thursday September 5, 2019
Discussion Leader: Asuman Turkmen
A Geometric Perspective on the Power of Principal Component Association Tests in
Multiple Phenotype Studies
by Liu and Lin, JASA https://doi.org/10.1080/01621459.2018.1513363.
- Thursday September 12, 2019
Discussion Leader: Chenggong Han
CIDR: Ultrafast and accurate clustering
through imputation for single-cell RNA-seq
data
by Lin et al. Genome Biology (2017) 18:59
- Thursday September 19, 2019
Discussion Leader: Qing Xie
Bayesian Estimation of Three-Dimensional Chromosomal
Structure from Single-Cell Hi-C Data
by Rosenthal et al. JOURNAL OF COMPUTATIONAL BIOLOGY 2019.
- Thursday September 26, 2019
Discussion Leader: Drew Richards
Exploiting biological priors and sequence
variants enhances QTL discovery and
genomic prediction of complex traits
by MacLeod et al. BMC Genomics (2016) 17:144.
- Thursday October 24, 2019
Discussion Leader: Shuyuan Lou
3CPET: finding co-factor complexes from
ChIA-PET data using a hierarchical Dirichlet
process
by Djekidel et al. Genome Biology (2015) 16:288.
- Thursday November 7, 2019 (Note: cancelled due to TDAI Fall Forum)
Discussion Leader: Zilu Liu
A Simple and Improved Correction for Population Stratification
in Case-Control Studies
by Epstein et al. AJHG (2007) 80:921-930.
- Thursday November 14, 2019
Discussion Leader: Cheng Cao
Maximum Rank Reproducibility: A Nonparametric Approach to Assessing Reproducibility in Replicate Experiments
by Philtron et al. J Am Stat Assoc. 2018 ; 113(523): 1028–1039.
Supplementary Material
- Thursday November 21, 2019
Discussion Leader: Juan Xie
LTMG: a novel statistical modeling of transcriptional
expression states in single-cell RNA-Seq data
by Wan et al. Nucleic Acids Research, 2019, Vol. 47, No. 18 e111.
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