Statistical Genetics and Bioinformatics Reading Group
Autumn 2021
Time: Thursdays 4:00-5:00 PM Zoom or 4:10-5:05 PM in CH228. Which mode will be used for a particular session will be announced at least one week before the scheduled meeting.
Place: Zoom
Information on reading materials will be updated as they become available.
For further information about this semester's reading group, please contact
Shili Lin.
- Thursday September 16, 2021
Discussion Leader: Meng Wang
MMDiff: quantitative testing for shape changes
in ChIP-Seq data sets
by Schweikert et al. BMC Genomics 2013, 14:826.
- Thursday September 23, 2021
Discussion Leader: Asuman Turkmen
A Practical Approach to Adjusting for Population Stratification in Genome-wide Association Studies: Principal Components And Propensity Scores (PCAPS)
by Zhao et al. Stat Appl Genet Mol Biol. 2018 Dec 4; 17(6).
Supplementary document
- Thursday October 7, 2021
Discussion Leader: Zilu Liu
Robustification of GWAS to explore effective SNPs addressing the challenges of hidden population stratification and polygenic effects
by Akond et al. Scientific Reports volume 11, Article number: 13060 (2021)
- Thursday October 21, 2021
Discussion Leader: Qingyu Chen
A small-sample kernel association test for correlated data with application to microbiome association studies
by Zhan et al. Genetic Epidemiology, 2018 Dec;42(8):772-82.
- Thursday November 4, 2021
Discussion Leader: Qiaolan Deng
graph-GPA: A graphical model for prioritizing
GWAS results and investigating pleiotropic
architecture
by Chung et al. PLoS Computational Biology, 2017.
- Thursday November 18, 2021
Discussion Leader: Shili Lin
Covariate adjusted inference of parent‐of‐origin effects
using case–control mother–child paired multilocus
genotype data
by Zhang et al. Genetic Epidemiology, Early View (2021)
- Thursday December 2, 2021
Discussion Leaders: Torey Hilbert and Fangyi Wang
Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis | Nature Genetics
by Sarkar & Stephens, Nature Genetics volume 53, pages770-777 (2021).
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