cLBL: Performs combined analysis of case-control and family trio data (06/27/2019)
The cLBL package may be downloaded from the links below
cLBL on Linux (Version 0.9.0 for running on Linux; in a zipped, tar file)
The cLBL package may also be downloaded from the github website directly
LBLGXE Version 1.3 can now handle complex sampling design. However, the older versions are still kept in case they are needed.
The LBLGXE package may be downloaded from the links below
LBLGXE (Version 1.3 for running on Linux; in a zipped, tar file; compiled with R 3.0 and based on a faster algorithm)
LBLGXE (Version 1.1 for running on Linux; in a zipped, tar file; compiled with R 3.0 and based on a faster algorithm)
LBLGXE (Version 1.0 for running on Linux; in a zipped, tar file; compiled with R 3.0)
LBLGXE (Version 1.3; compiled R package file for Windows in a zipped file, based on a faster algorithm)
LBLGXE (Version 1.1; compiled R package file for Windows in a zipped file, based on a faster algorithm)
LBLGXE (Version 1.0; compiled R package file for Windows in a zipped file)
Brief Instructions for installing and runing LBLGXE. Complete manual
The original LBL package may be downloaded from the links below
LBL (For running on Linux; in a zipped, tar file; compiled with R 2.15)
Brief Instructions for installing and runing LBL.
The famLBL package may be downloaded from the link below.
famLBL (For running on Linux; in a zipped, tar file; compiled with R 3.0)
Brief Instructions for installing and runing famLBL.
References:
Biswas, S., Xia, Shuang, Lin, S. (2013) Detecting Rare Haplotype-Environment Interaction with Logistic Bayesian LASSO. Genetic Epidemiology, 38:31-41.
Wang, M., Lin, S. FamLBL: Detecting causal rare haplotypes based on common SNPs using family data. Bioinformatics, 30:2611-2618
Yuan, Z., Biswas, S. An Improved Version of Logistic Bayesian LASSO for Detecting Rare Haplotype-Environment Interactions with Application to Lung Cancer. Cancer Informatics, 2015(Supplement):11–16
Zhou, X., Wang, M., Lin, S. Detecting Rare Haplotypes Associated with Complex Diseases Using Both Population and Family Data: Combined Logistic Bayesian Lasso. Manuscript.
If you have any questions, please email Shuang Xia at xia.64@osu.edu, Swati Biswas at Swati.Biswas@unthsc.edu, Meng Wang at wang.1357@osu.edu, Xiaofei Zhou at zhou.1150@osu.edu, or Shili Lin at shili@stat.osu.edu