Gerard and Kubatko -- HybTree
HybTree: A Perl Script for Estimating
Hybridization and Time Scales In the Presence of Deep Coalescence
The perl scripts available for download on this page can be used to
estimate the extent and timing of hybridization from a sample of gene
tree topologies. It is based on the method described in:
Gerard D, Gibbs HL, Kubatko L, 2011. "Estimating hybridization in the presence
of coalescence using phylogenetic intraspecific sampling".
More details and instructions for running the analysis are included in
the manual. The following files are available to download:
These scripts were created by David Gerard and are maintained by David
Gerard and Laura Kubatko. They were created as part
of OSU's RUMBA
Program, which is
supported by the National Science Foundation under Grant
DBI 0827256. Any opinions, findings, and conclusions
or recommendations expressed in this material are those of the
author(s) and do not necessarily reflect the views of the National
Please contact us with questions: David Gerard (gerard.16) or Laura
Kubatko (kubatko.2) -- both @osu.edu.
Copyright 2011 by David Gerard and Laura Kubatko. This software is provided
"as is" without warranty of any kind. In no event shall the author be
held responsible for any damage resulting from the use of this
software. The software is distributed free of charge.
Back to Laura Kubatko's main page.