Version 1.0
Laura Kubatko and Julia Chifman
Departments of Statistics and Evolution, Ecology, and Organismal Biology
The Ohio State University
Copyright 2015, 2016 by Laura Kubatko and Julia Chifman. This software
is provided "as is" without warranty of any kind. In no event
shall the author be held responsible for any damage resulting from
the use of this software. The program package, including source
codes, executables, and documentation, is distributed free of
charge. This software is covered under the Gnu GPL (General Public
License).
The method is described in the
following paper:
Kubatko, L. and J. Chifman. 2015.
An invariants-based method for efficient identification of hybrid
speciation from large-scale genomic data, submitted.
Available on bioRXiv.
About the Program
HyDe (Hybridization Detection) is a C program that computes the Hils
statistic for all sets of three taxa and an outgroup in a given
Phylip-formatted input
file. The output of the program is a list of test statistics and
p-values for the
Hils test that can be used to assess statistically significant evidence
for hybridization. Instructions for running the program are
here.
Unzip the program files and cd into the directory in which the
files are stored.
Type make at the prompt.
To run the program, type ./HyDe at the prompt.
Acknowledgements
Development of HyDe was partially supported by the
National Science Foundation under Grant DEB-1106706.
Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
Contact Info
Questions or comments concerning the program can be e-mailed to Laura
Kubatko
at kubatko.2@osu.edu.