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Pearl DK, Salter [Kubatko] LA.  2002.  The analysis of DNA sequences. Biostatistical Genetics and Genetic Epidemiology. :217-227.
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Li Q, Shen X, Pearl DK.  2007.  Bayesian Modeling of the Dynamics of Hepatotoxicity. Statistics in Medicine. 26:3591-3611.
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Notz WI, Pearl DK, Stasny EA.  2003.  Case Studies for the Practice of Business Statistics.
Casto BC, Kresty LA, Kraly CL, Pearl DK, Knobloch TJ, Schut HE, Stoner GD, Mallery SR, Weghorst CM.  2002.  Chemoprevention of Oral Cancer by Black Rasberries. Anticancer Research. 22:4005-4016.
Liu L, Yu L, Kubatko LS, Pearl DK, Edwards SV.  2009.  Coalescent methods for estimating multilocus phylogenetic trees. Molecular Phylogenetics and Evolution. 53(1):320-328.D.
Mansky LM, Pearl DK, Gajary LC.  2002.  Combination of drugs and drug- resistant reverse transcriptase results in a multiplicative increase of human immunodeficiency virus type mutant frequencies. Journal of Virology. 76:9253-9259.
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Oblinger JL, Pearl DK, Boardman CL, Saqr H, Prior TW, Scheithauer BW, Jenkins RB, Burger PC, Yates AJ.  2006.  Diagnostic and prognostic value of Glycosyltransferase mRNA in Glioblastoma Multiforme patients. Journal of Neuropathology and Applied Neurobiology. 32:410-418.
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Notz WI, Pearl DK, Stasny EA.  2001.  The Electronic Encyclopedia of Statistical Examples and Exercises.
Graham PL, Notz WI, Pearl DK, Stasny EA.  2003.  Electronic Resources: The Ohio State University EESEE Project. Journal of Applied Mathematics and Decision Sciences. 7:85-92.
Wang Q, Salter [Kubatko] LA, Pearl DK.  2002.  Estimation of evolutionary parameters with phylogenetic trees. Journal of Molecular Evolution. 55:684-695.
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Pearl DK, Bartoszynski R, Maa JF, Horn DJ.  2000.  High dimensional simulation-based estimation. Mathematical and Computer Modelling. 32:27-51.
Edwards SV, Liu L, Pearl DK.  2007.  High resolution species trees without concatenation. PNAS. 104:5936-5941.
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Acker SR, Pearl DK, Rissing SW.  2003.  Is the academy ready for learning objects? Syllabus. July:28-32.
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Pearl DK.  2001.  Lab and Activities Supplement for Moore's Statistics: Concepts and Controversies.
Pearl DK.  2000.  Lab and Exercise Manual for Statistics 135.
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Chaudhury C, Mehnaz S, Robinson JM, Hayton WL, Pearl DK, Roopenian DC, Anderson CL.  2003.  The MHC-related Fc receptor for IgG (FcRn) binds albumin and prolongs its lifespan. Journal of Experimental Medicine. 197:315-322.
Popko B, Pearl DK, Walker DM, Comas TC, Baerwald KD, Burger PC, Scheithauer BW, Yates AJ.  2002.  Molecular markers that identify human astrocytomas and oligodendrogliomas. Journal of Neuropathology and Experimental Neurology. 61(4):329-338.
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Li S, Pearl DK, Doss H.  2000.  Phylogenetic tree construction using Markov chain Monte Carlo. Journal of the American Statistical Association. 95:493-508.
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Santner TJ, Pearl DK.  2001.  Remembering Robert Bartoszynski. Mathematical and Computational Modeling. 33:xv-xvii.
Pearl DK.  2003.  Reply to the 2002 commentaries on Libet's findings. Consciousness and Cognition. 12:329-330.
Newton HB, Goldhurst S, Pearl DK.  2007.  Retrospective Analysis of the Efficacy and Tolerability of Levetriracetam in Brain Tumor Patients. Journal of Neuro-Oncology. 78:99-102.
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Burger PC, Pearl DK, Aldape K, Yates AJ, Scheithauer BW, Passe SM, Jenkins RB, James CD.  2001.  Small cell architecture: a histological equivalent of EGFR amplification in glioblastoma multiforme. Journal of Neuropathology and Experimental Neurology. 60 (11):1099-1104.
Poi MJ, Yen T, Li J, Song H, Lang JC, Shuller DE, Pearl DK, Casto BC, Tsai MD, Weghorst CM.  2001.  Somatic INK4a-ARF locus mutations: a significant mechanism of gene inactivation in squamous cell carcinoma of the head and neck. Molecular Carcinogenesis. 30:26-36.
Critchlow DE, Li S, Nourijelyani K, Pearl DK.  2000.  Some statistical methods for phylogenetic trees with application to HIV disease. Mathematical and Computer Modelling. 32:69-81.
Liu L, Pearl DK.  2007.  Species Trees from Gene Trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology. 56:504-514.
Van Brocklyn JR, Jackson CA, Pearl DK, Snyder PJ, Prior TW.  2005.  Sphingosine Kinase-1 Expression Correlates with Poor survival of patients with Glioblastoma Multiforme. Journal of Neuropathology and Experimental Neurology. 64:695-705.
Salter [Kubatko] LA, Pearl DK.  2001.  A stochastic search strategy for estimation of maximum likelihoodphylogenetic trees. Systematic Biology. 50:7-17.
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Pollack DJ, Li Q, Pearl DK.  2005.  Taxonomic Utility of a Phylogenetic Analysis of Phosphoglycerate Kinase Proteins of Archaea, Bacteria and Eukaryota: Insights by Bayesian Analyses. Molecular Phylogenetics and Evolution. 35:420-430.