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Rovin BH, Song H, Birmingham DJ, Hebert LA, Yu CY, Nagaraja HN.  2005.  Urine Chemokines as Biomarkers of Human Systemic Lupus Erythematosus Activity. Journal of the American Society of Nephrology. 16(2):467-473.
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Wu YL, Higgins GC, Rennebohm RM, Chung EK, Yang Y, Zhou B, Nagaraja HN, Birmingham DJ, Rovin BH, Hebert LA et al..  2006.  Three distinct profiles of serum complement C4 proteins in pediatric systemic lupus erythematosus (SLE) patients: tight associations of complement C4 and C3 protein levels in SLE but not in healthy subjects. Advances in experimental medicine and biology. 586:227-247.
Yu L, Verducci J, Blower P.  Submitted.  The Tau-Path Test for Monotone Association in an Unspecified Subpopulation: Applications to Chemogenomic Data Mining. Statistical Methodology.
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Blower P, Cross K, Fligner M, Myatt G, Verducci J, Yang C.  2004.  Systematic Analysis of Large Screening Sets in Drug Discovery. Current Drug Discovery Technologies. 1:37-47.
Birmingham DJ, Irshaid F, Gavit KF, Nagaraja HN, Yu CY, Rovin BH, Hebert LA.  2007.  Spot urine protein/creatinine ratio is an unreliable estimate of 24-hr proteinuria in most SLE nephritis flares. Kidney International. 72:865-870.
Dobra A, Hans C, Jones B, Nevins J, Yao G, West M.  2003.  Sparse graphical models for exploring gene expression data. Journal of Multivariate Analysis. 90:196-212.
Poi MJ, Yen T, Li J, Song H, Lang JC, Shuller DE, Pearl DK, Casto BC, Tsai MD, Weghorst CM.  2001.  Somatic INK4a-ARF locus mutations: a significant mechanism of gene inactivation in squamous cell carcinoma of the head and neck. Molecular Carcinogenesis. 30:26-36.
Burger PC, Pearl DK, Aldape K, Yates AJ, Scheithauer BW, Passe SM, Jenkins RB, James CD.  2001.  Small cell architecture: a histological equivalent of EGFR amplification in glioblastoma multiforme. Journal of Neuropathology and Experimental Neurology. 60 (11):1099-1104.
Wu YL, Savelli SL, Yang Y, Zhou B, Rovin B, Birmingham DH, Nagaraja HN, Hebert LA, Yu CY.  2007.  Sensitive and Specific Real-Time PCR Assays to Accurately Determine Gene Copy Number Variations (GCNVs) of Human Complement C4A, C4B, C4-Long, C4-Short and RCCX Modules: Elucidation of C4 GCNVs in 50 Consanguineous Subjects with Defined HLA Genotypes. Journal of Immunology. 179:3012-3025.
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Potter D, Yan P, Hung TH-M, Lin S.  2008.  Probe signal correction for differential methylation hybridization experiments. BMC Bioinformatics. 9:453.
Rovin BH, Song H, Hebert LA, Nadasdy T, Nadasdy G, Birmingham DJ, Yu CY, Nagaraja HN.  2005.  Plasma, urine, and renal expression of adiponectin in human systemic lupus erythematosus. Kidney International. 68(4):1825-1833.
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Wahba G, Lin Y, Lee Y, Zhang H.  2002.  Optimal properties and adaptive tuning of standard and nonstandard Support Vector Machines. Nonlinear Estimation and Classification. :125-143.
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Huang C, Yao Y, Cressie N, Hsing T.  2009.  Multivariate intrinsic random functions for cokriging. Mathematical Geosciences. 41:887-904.
Popko B, Pearl DK, Walker DM, Comas TC, Baerwald KD, Burger PC, Scheithauer BW, Yates AJ.  2002.  Molecular markers that identify human astrocytomas and oligodendrogliomas. Journal of Neuropathology and Experimental Neurology. 61(4):329-338.
Deatherage DE, Potter D, Yan P, Huang TH-M, Lin S.  2009.  Methylation analysis by microarray.
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Cho JY, Shen DHL, Yang W, Williams B, Buckwalter TLF, La Perle KMD, Hinkle G, Pozderac R, Kloos R, Nagaraja HN et al..  2002.  In vivo imaging and radioiodine therapy following sodium iodide symporter gene transfer in animal model of intracerebral gliomas. Gene Therapy. 9:1139-1145.
Cho JY, Shen DHY, Yang W, Williams B, Buckwalter TLF, La Perle KMD, Hinkle G, Pozderac R, Kloos R, Nagaraja HN et al..  2002.  In Vivo Imaging and Radioiodine Therapy Following Sodium Iodide Symporter Gene Transfer in Animal Model of Intracerebral Gliomas. Gene Therapy. 9:1139-1145.
McCord MR, Goel PK, Jiang Z, Coifman B, Yang Y, Merry C.  2002.  Improving AADT and VDT estimation with high-resolution satellite imagery. Proceedings of the XV Pecora Memorial Conference of the American Society of Phogrammetry and Remote Sensing (ASPRS). CD-ROM:48-56.
Fristad M, Verducci J, Walters K, Young M.  2009.  The Impact of Multi-Family Psychoeducation Groups (MFPG) in Treating Children Aged 8-12 with Mood Disorders. Archives of General Psychiatry. 66(9):1013-21.
Sun S, Yan P, Huang T, Lin S.  2009.  Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinformatics. 10:404
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Yifan H, Hsu JC.  2007.  Hochberg's step-up method: cutting corner off Holm's step-down method. Biometrika. 94:965-975.
Wang Z, Yan P, Potter D, Eng C, Huang TH, Lin S.  2007.  Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinformatics. 8:38.
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Yang Y, Chung EK, Wu YL, Savelli SL, Nagaraja HN, Zhou B, Hebert M, Jones KN, Shu Y, Kitzmiller K et al..  2007.  Gene Copy Number Variation and Associated Polymorphisms of Complement Component C4 in Human Systemic Lupus Erythematosus (SLE): Low Copy Number Is a Risk Factor for, High Copy Number Is a Protective Factor against, European American SLE Disease Susceptibi. American Journal of Human Genetics. 80(6):1037-1054.
Khalili A, Potter D, Yan P, Li L, Gray J, Huang T, Lin S.  2007.  Gamma-Normal-Gamma Mixture Model for Detecting Differentially Methylated Loci in Three Breast Cancer Cell Lines. Cancer Informatics. 2:43-54.
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Shi T, Yu B, Clothiaux EE, Braverman AJ.  2004.  Fusing MISR and MODIS Information for Polar Cloud Detection. Proceedings of the 38th Asilomar Conference on Signals, Systems, and Computers. 2:1705-1709.
Cressie N, Buxton BE, Calder CA, Craigmile PF, Dong C, McMillan NJ, Morara M, Santner TJ, Wang K, Young G et al..  2007.  From sources to biomarkers: A hierarchical Bayesian approach for human exposure modeling. Journal of Statistical Planning and Inference. 137:3361-3379.
Birmingham DJ, Nagaraja HN, Rovin BH, Spetie L, Zhao Y, Li X, Hackshaw KV, Yu CY, Malarkey WB, Hebert LA.  2006.  Fluctuation in self-perceived stress increases risk of flare in SLE nephritis patients carrying the 5-HT1A -1019G allele. Arthritis & Rheumatism. 54(10):3291-3299.
Cross K, Myatt G, Yang C, Fligner M, Verducci J, Blower P.  2003.  Finding Discriminating Structural Features by Reassembling Common Building Blocks. Journal of Medicinal Chemistry. 46:4770-4775.
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Shen DHY, Marsee DK, Schaap J, Yang W, Cho JY, Hinkle G, Nagaraja HN, Kloos RT, Barth RF, Jhiang SM.  2004.  Effects of dose, intervention time, and radionuclide on sodium iodide symporter (NIS) targeted radionuclide therapy. Gene Therapy. 11:161-169.
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Oblinger JL, Pearl DK, Boardman CL, Saqr H, Prior TW, Scheithauer BW, Jenkins RB, Burger PC, Yates AJ.  2006.  Diagnostic and prognostic value of Glycosyltransferase mRNA in Glioblastoma Multiforme patients. Journal of Neuropathology and Applied Neurobiology. 32:410-418.
Yang J, Lin S.  2009.  Detection of imprinting and heterogeneous maternal effects on high blood pressure using Framingham Heart Study data. BMC. 3, S125
Shi T, Clothiaux EE, Yu B, Braverman AJ, Groff GN.  2007.  Detection of Daytime Arctic Clouds using MISR and MODIS Data. Remote Sensing of Environment. 107:172-184.
Wang L, Lin S, Rammoham K, Liu Z, Liu J-Q, Liu R-J, Guinther N, Lima J, Zhou Q, Wang T et al..  2007.  A Destabilizing Di-nucleotide Deletion in 3'-Untranslated Region of CD24 mRNA Confers Protection against both Systemic and Organ-specific Autoimmune Diseases. PLoS Genetics. 3:e49.
Cataland S, Yang S, Witkoff L, Kraut E, Lin S, George J, Wu H.  2009.  Demographic and ADAMTS13 Biomarker Data as Predictors of Early Recurrences of Idiopathic Thrombotic Thrombocytpenic Purpura. Haematology. 83:559-564.
Shi T, Yu B, Clothiaux EE, Braverman AJ.  2008.  Daytime Arctic Cloud Detection based on Multi-angle Satellite Data with Case Studies. Journal of the American Statistical Association. 103 (482):584-593.
Shi T, Belkin M, Yu B.  2008.  Data Spectroscopy: Learning Mixture Models using Eigenspaces of Convolution Operators. Proceedings of the 25th International Conference on Machine Learning. :936-943.
Shi T, Belkin M, Yu B.  2009.  Data Spectroscopy: Eigenspaces of Convolution Operators and Clustering. Annals of Statistics. 37 (6B):3960-3984.
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Chen F, Chen Q, Yu H, Chen J, Hsu J.  2008.  Current statistical requirements for pharmaceutical clinical trials In China. Drug Information Journal . 42:321-330.
Birmingham DJ, Gavit KF, McCarty SM, Yu CY, Rovin BH, Nagaraja HN, Hebert LA.  2006.  Consumption of erythrocyte CR1 (CD35) is associated with protection against systemic lupus erythematosus renal flare. Clinical and Experimental Immunology. 143(2):274-80.
Ye KQ, Park DK, Li W, Dean AM.  2008.  Construction and Classification of Orthogonal Arrays with Small Runs. Statistics and Applications. 6:1-9.
Taslim C, Wu J, Yan P, Singer G, Ozer G, Parvin J, Huang T, Lin S, Huang K.  2009.  Comparative Study on ChIP-seq Data: Normalization and Binding Pattern Characterization. Bioinformatics. 25:2334-2340.
Liu L, Yu L, Kubatko LS, Pearl DK, Edwards SV.  2009.  Coalescent methods for estimating multilocus phylogenetic trees. Molecular Phylogenetics and Evolution. 53(1):320-328.D.
Rovin BH, Tang Y, Sun J, Nagaraja HN, Hackshaw KV, Gray L, Ladson-Wofford SE, Birmingham DJ, Yu CY, Spetie DN et al..  2005.  Clinical Significance Of Fever In The SLE Patient Receiving Steroid Therapy. Kidney International. 68(2):747-759.
Zhou QM, Rammonham K, Lin S, Robinson N, Li Q, Liu X, Bai XF, Yin L, Brook B, You M et al..  2003.  CD24 is a significant modifier for risk and progression of multiple sclerosis. Proceedings of the National Academy of Sciences (USA). 100:15041-15046.
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Rovin DH, Birmingham DJ, Nagaraja HN, Yu CY, Hebert LA.  2007.  Biomarker Discovery in Human SLE Nephritis. Bulletin of the NYU Hospital for Joint Diseases. 65(3):187-193.
Shi T, Yu B.  2006.  Binning in Gaussian Kernel Regularization. Statistica Sinica. 16:541-567.
Yu Q, MacEachern SN, Peruggia M.  Submitted.  Bayesian synthesis. Annals of Applied Statistics.
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DeIorio M, Mueller P, Rosner GL, MacEachern SN.  2003.  ANOVA DDP models: a review. Nonlinear Estimation and Classification. :467-475.
Yao Y, Lee Y.  2007.  Another Look at Linear Programming for Feature Selection via Methods of Regularization. Technical Report No. 800, Department of Statistics, The Ohio State University.
Shen X, Ye J.  2002.  Adaptive model selection. Journal of the American Statistical Association. 97:210-221.