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Submitted
Huang C, Hsing T, Cressie N, Ganguly AR, Protopopescu VA, Rao NS.  Submitted.  Bayesian source detection and parameter estimation of a plume model based on sensor network measurements. Applied Stochastic Models in business and Industry .
Yu Q, MacEachern SN, Peruggia M.  Submitted.  Bayesian synthesis. Annals of Applied Statistics.
Peruggia M, Hsu JC, Huang Y.  Submitted.  Cartesian Displays of Many Interval Estimates. The American Statistician.
Park DK, Bose M, Notz WI, Dean AM.  Submitted.  Efficient Balanced Repeated Measurement Designs in the Presence Interations Between Direct and Carry-Over Effects. Journal of Statistical Planning and Inference.
Browning CR, Byron RA, Calder CA, Peterson RD, Browning CR, Kwan M-R, Lee JY.  Submitted.  Patterns of Local Segregation: Do they Matter for Neighborhood Crime? American Journal of Sociology.
Herbei R, Lyons B, Laybourn-Parry J, Gardner C, Priscu J, McKnight D.  Submitted.  Physiochemical Properties Influencing Biomass Abundance and Primary Production in Lake Hoare, Antarctica Ecological Modeling. ?.
Paul R, Cressie N.  Submitted.  Remediation of contaminated soil using geostatistics. European Journal of Soil Science.
Browning CR, Byron R, Calder CA, Krivo LJ, Kwan M-R, Lee JY, Peterson RD.  Submitted.  Residential Concentration, and Crime: Land Use Patterns and Violence in Neighborhood Context. Journal of Research in Crime and Delinquency.
Zhang X, Peruggia M.  Submitted.  Targeted MCMC Algorithms for Bayesian Mixture Models. Journal of Computational and Graphical Statistics.
Beversdorf DQ, Sharma UK, Phillips NN, Notestine MA, Slivka AP, Friedman NM, Schneider SL, Nagaraja HN, Hillier A.  Submitted.  Effect of propranolol on naming in chronic Broca. Neurocase.
Popesco M, Lin S, Wang Z, Ma Z, Friedman L, Frostholm A, Rotter A.  Submitted.  Serial Analysis of Gene Expression (SAGE) profiles in the adult and aged mouse cerebellum. Neurobiology of Aging.
In Press
Craigmile PF, Peruggia M, Van Zandt T.  In Press.  Hierarchical Bayes Models for Response Time Data. Psychometrika.
2010
Craigmile PF, Peruggia M, Van Zandt T.  2010.  Detrending Response Time Series, in "Statistical methods for modeling human dynamics: An interdisciplinary dialogue", Notre Dame Series on Quantitative Methology. New York, NY: Taylor and Francis. 4
Stone AC, Battistuzzi F, Kubatko LS, Perry GH, Trudeau E, Lin H, Kumar S.  2010.  More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of Royal Society B. 365:inpress.
2009
Liu L, Yu L, Kubatko LS, Pearl DK, Edwards SV.  2009.  Coalescent methods for estimating multilocus phylogenetic trees. Molecular Phylogenetics and Evolution. 53(1):320-328.D.
Taslim C, Wu J, Yan P, Singer G, Ozer G, Parvin J, Huang T, Lin S, Huang K.  2009.  Comparative Study on ChIP-seq Data: Normalization and Binding Pattern Characterization. Bioinformatics. 25:2334-2340.
Brock G, Pihur V, Kubatko LS.  2009.  Detecting gene regulatory networks from microarray data usig fuzzy logic. Fuzzy Systems in Bioinformatics and Computational Biology. pgs:141-164.
Craigmile PF, Calder CA, Li H, Paul R, Cressie N.  2009.  Hierarchical model building, fitting, and checking: A behind-the-scenes look at a Bayesian analysis of arsenic exposure pathways. Bayesian Analysis. 4:1-62.
Deatherage DE, Potter D, Yan P, Huang TH-M, Lin S.  2009.  Methylation analysis by microarray.
2008
Koo J-Y, Lee Y, Kim Y, Park C.  2008.  A Bahadur Representation of the Linear Support Vector Machine. Journal of Machine Learning Research. 9:1343–1368.
Lin H-J, Zuo T, Lin C-H, Kuo CT, Liyanarachchi S, Sun S, Shen R, Deatherage DE, Potter D, Asamoto L.  2008.  Breast Caner-associated Fibroblasts Confer AKTl-mediated Epi-genetic Silencing of Cystatin M in Epithelial Cells. Cancer Research. 68:10257-10266.
Epifani I, MacEachern S, Peruggia M.  2008.  Case-Deletion Importance Sampling Estimators: Central Limit Theorems and Related Results. Electronic Journal of Statistics. 2:774-806.
Ye KQ, Park DK, Li W, Dean AM.  2008.  Construction and Classification of Orthogonal Arrays with Small Runs. Statistics and Applications. 6:1-9.
Santner TJ, Craigmile PF, Calder CA, Paul R.  2008.  Demographic and Behavioral Modifiers of Arsenic Exposure Pathways: A Bayesian Hierarchical Analysis of NHEXAS Data. Environmental Science and Technology. 42:5607-5614.
Pavlicova M, Santner TJ, Cressie N.  2008.  Detecting signals in FMRI data using powerful FDR procedures. Statistics and its Interface. 1:23-32.
Frank B, Hsu J, Pinheiro J, Liu Y.  2008.  Dose Finding - A Challenge in Statistics. Biometrical Journal. 50:480-504.
Blower PE, Chung JH, Verducci J, Lin S, Park JK, Dai Z, Liu CG, Schmittgen TD, Reinhold WC, Croce CM et al..  2008.  MicroRNAs Moderate the Chemosensitivity of Tumor Cells. Molecular Cancer Therapeutics. 7(1):1-9.
Potter D, Yan P, Hung TH-M, Lin S.  2008.  Probe signal correction for differential methylation hybridization experiments. BMC Bioinformatics. 9:453.
Kwan M-R, Peterson RD, Browning CR, Burrington, L., Calder CA, Krivo LJ.  2008.  Reconceptualizing Sociogeographical Context for the Study of Drug Use, Abuse, and Addiction.
Popesco M, Lin S, Wang Z, Ma Z, Friedman L, Frostholm A, Rotter A.  2008.  Serial Analysis of Gene Expression (SAGE) profiles in the adult and aged mouse cerebellum. Neurobiology of Aging. 29:774-788.
Clark DL, Arnold LE, Crowl L, Bozzolo H, Peruggia M, Ramadan Y, Bornstein R, Hollway JA, Thompson S, Malone K et al..  2008.  Vestibular Stimulation for Attention-Deficit/Hyperactivity Disorder (ADHD):Randomized Controlled Trial of Comprehensive Motion Apparatus. Journal of Attention Disorders. 11:599-611.
2007
Paul R, Cressie N, Buxton BE, Calder CA, Craigmile PF, Li H, McMillan NJ, Morara M, Sanford J, Santner TJ et al..  2007.  A Bayesian hierarchical model of arsenic exposure based on NHEXAS data: A comparison of US EPA Region 5 and Arizona. 2007 Proceedings of the Joint Statistical Meetings. :1055-1062.
MacEachern SN, Gelfand AE, Guindani M, Petrone S.  2007.  Bayesian non parametric modelling of spatial data using the Dirichlet process. in Bayesian Statistics 8, Proceedings of the Eighth Valencia International Meeting. :196-198.
Papachristou B, Abney M, Lin S.  2007.  Confidence intervals of QTLs - development and application of new linkage methods. BMC Proceedings. 1:S91.
Peruggia M.  2007.  Bayesian Model Diagnostics Based on Artificial Autoregressive Errors. Bayesian Analysis. 2:817-842.
Peruggia M.  2007.  Bayesian Model Diagnostics Based on Artificial Autoregressive Errors. (This is a synopsis of the 2007 Bayesian Analysis article by the same title.). Bayesian Statistics 8. :659–654.
Li Q, Shen X, Pearl DK.  2007.  Bayesian Modeling of the Dynamics of Hepatotoxicity. Statistics in Medicine. 26:3591-3611.
Santner TJ, Pradhan V, Senchaudhuri P, Mehta C, Tamhane A.  2007.  Comparisons of Confidence Intervals for the Difference of Two Independent Binomial Proportions. Computational Statistics and Data Analysis. 51:5791–5799.
Khalili A, Potter D, Yan P, Li L, Gray J, Huang T, Lin S.  2007.  Gamma-Normal-Gamma Mixture Model for Detecting Differentially Methylated Loci in Three Breast Cancer Cell Lines. Cancer Informatics. 2:43-54.
Wang Z, Yan P, Potter D, Eng C, Huang TH, Lin S.  2007.  Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinformatics. 8:38.
Edwards SV, Liu L, Pearl DK.  2007.  High resolution species trees without concatenation. PNAS. 104:5936-5941.
Wang Z, Lin S, Popesco M, Rotter A.  2007.  Modeling and Analysis of Multi-library, Multi-group SAGE Data with Application to a Study of Mouse Cerebellum. Biometrics. 63:777-786.
Elsheikh BH, Bollman E, Peruggia M, King W, Galloway G, Kissel J.  2007.  Pilot Trial of Diltiazem in Facioscapulohumeral Muscular Dystrophy. Neurology. 68:1428-1429.
Newton HB, Goldhurst S, Pearl DK.  2007.  Retrospective Analysis of the Efficacy and Tolerability of Levetriracetam in Brain Tumor Patients. Journal of Neuro-Oncology. 78:99-102.
Liu L, Pearl DK.  2007.  Species Trees from Gene Trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology. 56:504-514.
2006
Cressie N, Perrin O, Thomas-Agnan C.  2006.  Doctors' prescribing patterns in the Midi-Pyrenees region of France: Point-process aggregation. Case Studies in Spatial Point Process Modeling. 185:183-195.
Pavlicova M, Cressie N, Santner TJ.  2006.  Testing for activation in data from FMRI experiments. Journal of Data Science. 4:275-289.
Nagaraja HN.  2006.  Characterizations of Probability Distributions. Springer Handbook of Engineering Statistics. :79-95.
Suratt P, Peruggia M, D'Andrea L, Diamond R, Barth J, Nikova-Draguleva M, Perriello V, Johnson M.  2006.  Cognitive Function and Behavior in Children with Adenotonsillar Hypertrophy Suspected of Having Obstructed Sleep Disordered Breathing. Pediatrics. 118:e771-e781.
Papachristou C, Lin S.  2006.  A comparison of methods for intermediate fine mapping. Genetic Epidemiology. 30:677-689.