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Publications

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Special Volume
DeIorio M, Mueller P, Rosner GL, MacEachern SN.  2003.  ANOVA DDP models: a review. Nonlinear Estimation and Classification. :467-475.
Peruggia M.  2007.  Bayesian Model Diagnostics Based on Artificial Autoregressive Errors. (This is a synopsis of the 2007 Bayesian Analysis article by the same title.). Bayesian Statistics 8. :659–654.
Bortnick SM, Dean AM, Hsu JC.  2001.  Block designs for comparison of two test treatments with a control. Optimum Design 2000. :167-180.
Du Toit SHC, Browne MW.  2001.  The covariance structure of a vector ARMA time series. Structural Equation Modeling: Present and Future. :279-314.
Du Toit SHC, Browne MW.  2001.  The covariance structure of a vector time series. Structural Equation Modeling: Present and Future. :279-314.
Hsu J, Rao Y, Lee Y, Chang J, Bergsteinsdottir K, Magnusson MK, Wang T, Steingrimsson E.  2009.  Design and Analysis of Microarray Experiments for Pharmacogenonomics. Multiple Testing Problems In Pharmaceutical Statistics. :239-264.
Dean AM.  2001.  Experimental design: an overview. International Encyclopedia of the Social and Behavioral Sciences.
Wahba G, Lin Y, Lee Y, Zhang H.  2002.  Optimal properties and adaptive tuning of standard and nonstandard Support Vector Machines. Nonlinear Estimation and Classification. :125-143.
David HA, Nagaraja HN.  2005.  Order Statistics. Encyclopedia of Statistical Sciences, Revised Edition.
Ankenman BE, Dean AM.  2003.  Quality Improvement and Robustness via Design of Experiments. Handbook of Statistics. 22:263-317.
Lehman JS, Wolfe DA, Dean AM, Hartlaub BA.  2001.  Rank-based procedures for analysis of factorial effects. Recent Advances in Experimental Designs and Related Topics. :35-64.
Journal Article
DeIorio M, Muller P, Rosner GL, MacEachern SN.  2004.  An ANOVA model for dependent random measures. Journal of the American Statistical Association. 99:205-215.
Dunson DB, Holloman C, Calder CA, Gunn L.  2004.  Bayesian Analysis of Lesion Onset and Growth from Interval Censored Data. Biometrics. 60:676-683.
Hans C, Dunson DB.  2005.  Bayesian inferences on umbrella orderings. Biometrics. 61:1018-1026.
Dean AM, Notz WI, Kao LJ.  2002.  A bound for efficiency in multiple response designs. Journal of Statistical Planning and Inference. 106:235-244.
Lin H-J, Zuo T, Lin C-H, Kuo CT, Liyanarachchi S, Sun S, Shen R, Deatherage DE, Potter D, Asamoto L.  2008.  Breast Caner-associated Fibroblasts Confer AKTl-mediated Epi-genetic Silencing of Cystatin M in Epithelial Cells. Cancer Research. 68:10257-10266.
Hsing T, Liu L-Y, Brun M, Dougherty E.  Submitted.  The coefficient of intrinsic dependence. Pattern Recognition.
Suratt P, Peruggia M, D'Andrea L, Diamond R, Barth J, Nikova-Draguleva M, Perriello V, Johnson M.  2006.  Cognitive Function and Behavior in Children with Adenotonsillar Hypertrophy Suspected of Having Obstructed Sleep Disordered Breathing. Pediatrics. 118:e771-e781.
Klatte ET, Scharre D, Nagaraja HN, Davis RA, Beversdorf DQ.  2003.  Combination therapy of donepezil and vitamin E in Alzheimer's disease. Alzheimer Disease and Associated Disorders. 17:113-116.
Dean AM, Lewis SM.  2002.  Comparison of group screening strategies for factorial experiments. Computational Statistics and Data Analysis. 39:287-297.
Lin S, Ding J, Dong C, Liu Z, Ma ZJ, Wan S, Xu Y.  2005.  Comparisons of methods for linkage analysis and haplotype reconstruction using extended pedigree data. BMC Genetics. 6:S76.
Liu Y, Ruan S, Dean AM.  2007.  Construction and Analysis of Es2 Efficient Supersaturated Designs. Journal of Statistical Planning and Inference. 137:1516-1529.
Ye KQ, Park DK, Li W, Dean AM.  2008.  Construction and Classification of Orthogonal Arrays with Small Runs. Statistics and Applications. 6:1-9.
Vine AE, Lewis SM, Dean AM, Brunson D.  2008.  A Critical Assessment of Two-Stage Group Screening Through Industrial Experimentation. Technometrics. 50:15-25.
Ruan S, MacEachern SN, Otter T, Dean AM.  2008.  Dependent Poisson Race Model and Modeling Dependence in Conjoint Choice Experiments. Psychometrika. 73:261-288.
Liu Q, Dean AM, Allenby G.  2007.  Design for Estimation of Population Mean and Variance in Hierarchical Linear Models. Jurnal of Statistical Theory and Practice. 1:311-328.
Lewis SM, Dean AM.  2001.  Detection of interactions in experiments on large numbers of factors (with discussion). Journal of the Royal Statistical Society, B. 63:633-672.
Zhou J, Ding J, Fung W, Lin S.  2010.  Detection of Parent-of-Origin Effects Using General Pedigree Data. Genetic Epiemiology. 34:151-158.
Doss H.  2002.  Discussion of "A theory of statistical models for Monte Carlo integration" by A. Kong, P. McCullagh, X. L. Meng, D. Nicolae, and Z. Tan. Journal of the Royal Statistical Society, B. 65
LaDeau SL, Calder CA, Doran PJ, Marra PP.  Submitted.  Does Anthropogenic Development Facilitate West Nile Virus Amplication in North America? Ecological Research .
Flack JE, Cook JR, May SJ, Lemeshow S, Engelman RM, Rousou JA, Deaton DW.  2000.  Does cardioplegia type affect outcome and survival in patients with advanced left ventricular dysfunction? Results from the CABG Patch Trial Circulation. 102(19):84-89.
Bortnick SM, Dean AM, Hsu JC.  2005.  Efficiency of block designs for simultaneous comparison of two test treatments with a control. Journal of Statistical Planning and Inference. 129:109-124.
Park DK, Bose M, Notz WI, Dean AM.  Submitted.  Efficient Balanced Repeated Measurement Designs in the Presence Interations Between Direct and Carry-Over Effects. Journal of Statistical Planning and Inference.
Clark JB, Dean AM.  2001.  Equivalence of fractional factorial designs. Statistica Sinica. 11:537-547.
Blumenthal S, Dahiya RC.  2005.  Estimating scale and truncation parameters for the truncated exponential distribution with type I censored sampling. Communications in Statistics-Theory and Methods. 34
Simon SR, Tejwani SG, Wilson DL, Santner TJ, Denniston NL.  2000.  Evaluation of arthrodesis as an early surgical alternative to conservative management of charcot arthropathy of the diabetic foot. Journal of Bone and Joint Surgery. 82-A:939-950.
Ranjan P, Bingham DR, Dean AM.  2009.  Existence and Construction of Randomization Defining Contrast Subspaces for Factorial Designs. Annals of Statistics. 37:3580-3599.
Jones B, Carvalho C, Dobra A, Hans C, Carter C, West M.  2005.  Experiments in stochastic computation for high-dimensional graphical models. Statistical Science. 20:388-400.
Russell KG, Lewis SM, Dean AM.  2004.  Fractional factorial designs for the detection of interactions between design and noise factors. Journal of Applied Statistics. 36:545-552.
Cressie N, Buxton BE, Calder CA, Craigmile PF, Dong C, McMillan NJ, Morara M, Santner TJ, Wang K, Young G et al..  2007.  From sources to biomarkers: A hierarchical Bayesian approach for human exposure modeling. Journal of Statistical Planning and Inference. 137:3361-3379.
Dressman H, Hans C, Bild A, Olson J, Rosen E, Marcom P, Liotcheva V, Jones E, Vujaskovic Z, Marks J et al..  2006.  Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy. Clinical Cancer Research. 12:819-826.
Rich J, Hans C, Jones B, Iversen E, McClendon R, Rasheed B, Dobra A, Dressman H, Bigner D, Nevins J et al..  2005.  Gene expression profiling and genetic markers in glioblastoma survival. Cancer Research. 65:4051-4058.
Degnan J, Salter [Kubatko] LA.  2005.  Gene tree distributions under the coalescent process. Evolution. 59:24-37.
Isaac PD, Dean AM, Ostrom T.  2001.  Generating pairwise balanced Latin Squares. Statistics and Applications. 3:25-46.
Daniels MJ, Cressie N.  2001.  A hierarchical approach to covariance-function estimation for time series. Journal of Time Series Analysis. 22:253-266.
Nass R, Gilrain J, Anderson S, Gaylinn B, Dalkin A, Day R, Peruggia M, Thorner MO.  2000.  High plasma growth hormone (GH) levels inhibit expression of GH secretagogue receptor messenger ribonucleic acid levels in the rat pituitary. Endocrinology. 141:2084-2089.
Pollak CP, Tryon WW, Nagaraja HN, Dzwonczyk..  2001.  How accurately does wrist actigraphy identify the states of sleep and wakefulness? Sleep. 24(8):957-965.
Kubatko LS, Degnan JH.  2007.  Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology. 56:17-24.
Diaz PT, King MA, Pacht ER, Wewers MD, Gadek JE, Nagaraja HN, Drake J, Clanton TL.  2000.  Increased susceptibility to pulmonary emphysema among HIV-seropositive smokers. Annals of Internal Medicine. 132(5):369-372.
s. Lin, Ding J.  2009.  Integration of Ranked Lists via Cross Entropy Monte Carlo with Applications to mRNA Studies. Biometrics. 65:9-18.